PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572256.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 807aa    MW: 89935.5 Da    PI: 9.027
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572256.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73e-06138158526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +Cr+fa  G C++G+ C+F H 
  XP_012572256.1 138 PCRDFAV-GNCRRGSHCHFLHH 158
                     8******.*************6 PP

2zf-CCCH185.3e-06261282426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      +C+ f+++G C+ G  C+F+H+
  XP_012572256.1 261 TPCK-FFAFGNCRNGKDCRFSHD 282
                     5899.8888*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.333133160IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-5137159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.174192220IPR000571Zinc finger, CCCH-type
SMARTSM003560.05193218IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-4257283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84258284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5260282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MNLNLHLRSW RSFTGVTNSN NSRRPYLASN DMIKPRMEFL SKEPFSGGRG SNRDDVRNED  60
YRVFDATIAQ GTDGSYDMDI SPGFEEWKNR KHGQSAKDDY GSAMSRRSRS HSRSPPRGFK  120
YSAVDERNRT RAGRTAQPCR DFAVGNCRRG SHCHFLHHDN QSYEDSRESR HRQDGPRYSN  180
SRESGDYSLA SQRSNEACIN FAKGRCRTGE SCKYVHHGNS DGFDNKVSAD ESSRQREIDR  240
RRSDNSFKQG GQHYPNHSGN TPCKFFAFGN CRNGKDCRFS HDRQAFTSPI GRLRDDRSRS  300
NQGEDQVLGR PKISDSVIPN GRPRDDRWGS DGSMADVGKV WDGPKQNDLV AVSDTAKMVE  360
DNKNGIIGAA EPGFIAWPMS DRRDHSFDKN IVHNESPFSI DKKEGNCSKA ENATDNILIS  420
QSVGGGIWPG DETMSPDWNY GARSSSHVND EHGQNKQQVA PGQGLIQNSQ NISASQVVGQ  480
SQTTVSIVTP RARIIESIQN QEHSTEKNYI VEPNTMNASL SQISSRNTPT QNVVSKEQLA  540
QLSCLSASLA HILGTDQKLP QLHSTSNSYD AKDTLFGSKI EGSGDPVSLT FIKPDPAIGL  600
KQYDTMCDSM GPKNTNASVV PPTFSPIKIP KNAVEIPPQL SNLGQSFDDS RKTAISEEPH  660
VKNEHLFHLQ LCENIKVQNE TSKIVAEEKP SSQSENKITK ENSPLGNMDQ NVGPEDAKKT  720
KDAKGTRAFK ISLVELIKEL LKPTWKDGKI TKEDYKAIVK KVTDKVTGTV QRVHIPQTQE  780
KIDRYLSVSK PKLIKLVQAY VEKAQKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572256.10.0PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLG7LE040.0G7LE04_MEDTR; Uncharacterized protein
STRINGGLYMA04G39221.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-13C3H family protein